From: Arun Isaac <arunisaac@systemreboot.net>
To: "Ludovic Courtès" <ludo@gnu.org>
Cc: guix-science@gnu.org, ravanan@systemreboot.net
Subject: Re: Guix, CWL, ravanan and reproducibility talk at UCL
Date: Thu, 23 Apr 2026 23:29:59 +0100 [thread overview]
Message-ID: <87y0id9uoo.fsf@systemreboot.net> (raw)
In-Reply-To: <87v7dhvnll.fsf@gnu.org>
Hi Ludo,
> I would encourage you to turn your talk in a post at
> <https://hpc.guix.info/blog> and/or in a refereed paper.
Yes, certainly on the cards! Sorry I've been promising this for many
months now but haven't delivered yet. But, will do.
>> To the bioinformaticians reading this, it may be of interest that we
>> ported pggb (the pangenome building pipeline) from the original bash
>> script to CWL. Links to the original and the port below:
>
> Do you have experience running existing CWL bioinfo pipelines “from out
> there” with ravanan?
No, I haven't tried yet. But, that's a good idea. I will try it out.
Regards,
Arun
next prev parent reply other threads:[~2026-04-23 22:30 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2026-04-22 10:59 Arun Isaac
2026-04-22 12:47 ` Konrad Hinsen
2026-04-23 12:59 ` Ludovic Courtès
2026-04-23 22:29 ` Arun Isaac [this message]
2026-04-23 14:57 ` Reza Housseini
2026-04-23 22:33 ` Arun Isaac
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