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From: Arun Isaac <arunisaac@systemreboot.net>
To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@gnu.org>
Cc: guix-science@gnu.org, ravanan@systemreboot.net
Subject: Re: Guix, CWL, ravanan and reproducibility talk at UCL
In-Reply-To: <87v7dhvnll.fsf@gnu.org>
References: <87cxzrb6r5.fsf@systemreboot.net> <87v7dhvnll.fsf@gnu.org>
Date: Thu, 23 Apr 2026 23:29:59 +0100
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Hi Ludo,

> I would encourage you to turn your talk in a post at
> <https://hpc.guix.info/blog> and/or in a refereed paper.

Yes, certainly on the cards! Sorry I've been promising this for many
months now but haven't delivered yet. But, will do.

>> To the bioinformaticians reading this, it may be of interest that we
>> ported pggb (the pangenome building pipeline) from the original bash
>> script to CWL. Links to the original and the port below:
>
> Do you have experience running existing CWL bioinfo pipelines =E2=80=9Cfr=
om out
> there=E2=80=9D with ravanan?

No, I haven't tried yet. But, that's a good idea. I will try it out.

Regards,
Arun